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Software on NCI National Facility and regional HPC facilities

Software at the National Facility or Regional HPC facilities: All regional HPC facilities -- Partners -- NCI National Facility @ ANU AC3 / NSW CSIRO ASC iVEC / WA eRSA / SA TPAC / Tas QPSF / Qld VPAC / Vic -- University Sites -- James Cook University (QPSF) Griffith University (QPSF) UQ (QPSF) Queensland Uni of Technology (QPSF) Central Queensland University Swinburne Astrophysics University of Melbourne University of Canterbury RSES Terrawulf Monash University

The following is a list of software installed on systems at the APAC National Facility and on State or university-based computational systems. To view the software installed at a location, select the location from the drop down menu above. The documentation includes a description of the software available as well as details on its usage on the system selected.

The indicates software that requires some discussion with the facility staff on that system before it can be used. Read the specific software page on the system for more details.

New software for the National Facility can be through the software request form.


Click here to see the list of recently installed software

Astronomy & Astrophysics	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
AIPS++
ftools
IRAF

Bioinformatics	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
BEAST
BioConductor
BIOPERL
BIOPYTHON
BLAST
g0penMol
HMMER
mpiBLAST
MPI-HMMER
MrBayes

CFD & Engineering	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
ABAQUS
CFX
COMSOL Multiphysics
Elfen
Ensight
Fastflo
FDS
Fluent
LS-Dyna
MSC Adams
MSC Dytran
MSC Marc
MSC Nastran
MSC Patran
OpenFOAM

Climate Modelling & Earth Systems	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
CCSM3
CSIRO Mk3L
ESCM
ferret
GOCAD
GOTM
GrADS
NCARG
NCL
POM

Code Development Utilities	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
Apprentice2
CMake
CppUnit
CVS
FLTK
Forcheck
GEOS
Git
Intel Thread Checker
SCons
subversion

Compilers	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
C and C++
Fortran
HPF
PGI

Computational Chemistry	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
ABINIT
Accelrys Materials Studio
ACES II
ADF
Amber
ARP/wARP
AutoDock
boxshade
Cambridge
CASTEP
CCP4
CHARMM
Clustal
CNSSolve
CPMD
DALTON
deMon
DFTB-PLUS
Discover
DMol3
DOCK
Dylax
EMBOSS
ESPResSo
fluctuate
Gamess-PLUS
Gamess-US
Gaussian
GaussView
Gene Cluster
GROMACS
GULP
lamarc
LAMMPS
MCCCS-Towhee
Migrate
Modeller
modeltest
Molcas
Molden
Molekel
Molpro
MOPAC
MRCC
mrmodeltest
NAMD
NCBI Toolkit
NW-Chem
Open Babel
PAUP
Phylip
platon
PWscf
Quantum ESPRESSO
readseq
SAPT
Schrodinger
SIESTA
SMXGAUSS
SnB
test
TURBOMOLE
VASP
VMD
WIEN2k
wise2
XPLOR-NIH
xtal

Data Mining	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
lucene

Debuggers & Profilers & Simulators	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
DDD
Electric Fence
Intel Debugger
Intel Trace Analyzer
Intel Trace Collector
Intel VTune
Jumpshot
Totalview
valgrind
Vampir and Vampirtrace

Editors	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
Emacs
gedit
nano
nedit
Vim
Xemacs

File Formats & Data management packages	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
Hadoop
HDF4
HDF5
IRAF
lzma
mysql
NCO
netCDF
netpbm
postgres
UDUNITS
xz

Geophysics	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
CitcomS
escript/Finley
esys_particle
Gamit
gLucifer
PICellerator
RT
RTescript
RTfastflo
snark
StGermain
StgFEM
swframe_rt
Tempest
Underworld

Geospatial tools	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
Flac3D
GDAL
GRASS
PROJ.4

Graphics	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
Blender
CCP4
ferret
Freesurfer
FSL
gLucifer
GMT
GNUplot
Grace
IDL
ImageMagick
IPP
libFAME
MESA
NCARG
NCL
Ncview
netpbm
OpenDX
Paraview
PDL
PGplot
POVRay
VisIt
VMD

Math Libraries	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
ARPACK and PARPACK
ATLAS
BLACS
BLAS
Boost
CPLEX
FFTW
GSL
Intel IPP
LAPACK
LIBGOTO
MathKeisan
MKL
NAG
Scalapack
SCSL
Tao

Network Access and Grid Services	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
ftp
Globus
GridFTP
grix
MacFUSE sshfs
ncftp
OPeNDAP
sftp
SRB
ssh
VNC

Parallel Programming Libraries/Tools	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
Craypat
Global Array (GA) Tools
GNU Pthreads
GridGain
Intel TBB
Intel Thread Checker
MCT
MPI
PVM
Star-P

Photonics	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
FullWAVE

Scripting Languages	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
java
Perl
Python
Ruby
TCL-NAP
Tcl/Tk

Statistics & Mathematics Environments	NCI National Facility @ ANU	AC3 / NSW	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QPSF / Qld	VPAC / Vic	Other APAC associated sites
ACML
EGSnrc
Fastflo
GAMS
Maple
Mathematica
Matlab
MATLAB DCS
Octave
PETSc
R
Scilab
Splus
SPM
Stata
TCL-NAP