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Software on NCI National Facility and regional HPC facilities

Software at the National Facility or Regional HPC facilities: All regional HPC facilities -- Partners -- NCI National Facility @ ANU INTERSECT CSIRO ASC iVEC / WA eRSA / SA TPAC / Tas QCIF / Qld VPAC / Vic VLSCI @ UMelb NCI Specialised Facility in Bioinformatics -- University Sites -- James Cook University (QCIF) Griffith University (QCIF) UQ (QCIF) Queensland Uni of Technology (QCIF) Central Queensland University Swinburne Astrophysics University of Melbourne University of Canterbury RSES Terrawulf Monash University Queensland Facility for Advanced Bioinformatics

The following is a list of software installed on systems at the APAC National Facility and on State or university-based computational systems. To view the software installed at a location, select the location from the drop down menu above. The documentation includes a description of the software available as well as details on its usage on the system selected.

The indicates software that requires some discussion with the facility staff on that system before it can be used. Read the specific software page on the system for more details.

New software for the National Facility can be through the software request form.


Click here to see the list of recently installed software

Astronomy & Astrophysics	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
cfitsio
DS9
ftools
IRAF
pyfits
scipy

Bioinformatics	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
abwt
ABySS
BEAST
BioConductor
BIOPERL
BIOPYTHON
BLAST
bowtie
BRAINCIRC
BWA
circuitscape
Clustalw
Cufflinks
Desmond
em3d
gOpenMol
HMMER
libctl
MAQ
meme
Mothur
mpiBLAST
MPI-HMMER
MrBayes
PhyML
Tophat
Velvet
wgs-CABOG

CFD & Engineering	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
ABAQUS
Ansys
CFX
COMSOL
COMSOL Multiphysics
Elfen
Ensight
Fastflo
FDS
Fluent
Hyperworks
Hypre
LS-Dyna
madymo
meep
MSC Adams
MSC Dytran
MSC Marc
MSC Nastran
MSC Patran
OpenFOAM

Climate Modelling & Earth Systems	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
CCSM3
CCSM4
CDAT
CDO
CMOR2
CSIRO Mk3L
ESCM
ferret
Geant
GOCAD
GOTM
GrADS
NCARG
NCL
POM
Unified Model
wrf

Code Development Utilities	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
Ant
Apprentice2
CLHEP
CMake
CppUnit
Cuda
CVS
ecat
Forcheck
GEOS
Git
Intel Thread Checker
matio
Mono
SCons
subversion

Compilers	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
C and C++
Cuda
Fortran
HPF
intel
PGI
Sun Studio

Computational Chemistry	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
ABINIT
Accelrys Materials Studio
ACES III
ADF
Amber
ARP/wARP
AutoDock
autogrow
boxshade
Cambridge
CASTEP
CCP4
CFOUR
CHARMM
Clustal
CNSSolve
CPMD
DALTON
DFTB-PLUS
Discover
DMol3
DOCK
Dylax
EMBOSS
ESPResSo
fluctuate
Gamess-PLUS
Gamess-US
Gaussian
GaussView
Gene Cluster
GROMACS
GULP
Itksnap
lamarc
LAMMPS
ligplot
MCCCS-Towhee
mgltools
Migrate
Modeller
modeltest
Molden
Molekel
Molpro
MOPAC
MRCC
mrmodeltest
NAMD
NCBI Toolkit
NW-Chem
Open Babel
ORCA
PAUP
Phaser
Phylip
platon
PWscf
Q-Chem
Quantum ESPRESSO
readseq
ReaxMD
SAPT
Schrodinger
SIESTA
SMXGAUSS
SnB
test
TURBOMOLE
VASP
VMD
WIEN2k
wise2
xtal

Data Mining	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
gate
jaida
jas3
lucene

Debuggers & Profilers & Simulators	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
DDD
Electric Fence
gate
gdb
Intel Debugger
Intel Trace Analyzer
Intel Trace Collector
Intel VTune
Jumpshot
Sun Studio
Totalview
valgrind
Vampir and Vampirtrace
wine

Editors	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
Emacs
gedit
nano
nedit
Vim
Xemacs

File Formats & Data management packages	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
gate
Hadoop
HDF4
HDF5
ipscan
IRAF
lzma
mysql
NCO
netCDF
netpbm
postgres
UDUNITS
xz

Geophysics	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
CitcomS
escript/Finley
esys_particle
ESyS-Particle
Gale
Gamit
RT
RTescript
RTfastflo
snark
StGermain
swframe_rt
Tempest
Underworld

Geospatial tools	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
Flac3D
GDAL
GRASS
PROJ.4

Graphics	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
Blender
BLT
CCP4
CGAL
DAWN
em3d
ferret
FFMPEG
freeglut
Freesurfer
FSL
Genreg
GMT
GNUplot
Grace
Graphiz
h5utils
IDL
ImageJ
ImageMagick
imod
jasper
libFAME
MESA
minibaum
NCARG
NCL
Ncview
netpbm
OpenDX
Paraview
PDL
PGplot
POVRay
VisIt
VMD

Math Libraries	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
ARPACK and PARPACK
ATLAS
BLACS
BLAS
Boost
CPLEX
FFTW
gotoblas
GSL
Harminv
imsl
Intel IPP
Lal
LAPACK
LIBGOTO
lpsolve
MathKeisan
MKL
MPFR
NAG
Scalapack
SCSL
Tao

Network Access and Grid Services	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
bbcp
ftp
Globus
GridFTP
grix
ncftp
OPeNDAP
sftp
SRB
ssh
VNC

Parallel Programming Libraries/Tools	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
Craypat
gate
Global Array (GA) Tools
GMP
GNU Pthreads
GridGain
hpmpi
Intel TBB
Intel Thread Checker
libframe
lpsolve
Marmot
mash
metaio
minibaum
MPI
mpj
OpenMP
PVM
Star-P
Sun Studio

Photonics	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
FDTD
FullWAVE
g4beamline

Scripting Languages	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
gate
Glue
java
Perl
Python
Ruby
TCL-NAP
Tcl/Tk

Statistics & Mathematics Environments	NCI National Facility @ ANU	INTERSECT	CSIRO ASC	iVEC / WA	eRSA / SA	TPAC / Tas	QCIF / Qld	VPAC / Vic	Other APAC associated sites	VLSCI @ UMelb	NCI Specialised Facility in Bioinformatics
ACML
EGSnrc
Fastflo
GAMS
imsl
lmf
Maple
Mathematica
Matlab
MATLAB DCS
numpy
Octave
PETSc
R
Scilab
Splus
SPM
Stata
TCL-NAP