|What is ABySS
||ABySS is a de novo sequence assembler that is designed for very short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.
|How to Use ABySS on xe
||To ensure that the executables ABYSS and ABYSS-P are on your path do
module load abyss/1.2.5
To run ABYSS-P use ''mpirun ABYSS-P ...''
||There are man pages for ABYSS, abyss-pe and abyss-tofastq.
Further information can be obtained from the
ABySS web site.
| Metadata for using ABySS on xe
| XML Query for ABySS on xe