ABySS - NCI National Facility
National Computational Infrastructure
NCI National Facility
Software at a site Software by category Facilities at a site Login
        Generic (all NCI systems)       Version specific (all NCI systems)       Host and version specific
   ABySS -> ABySS 1.2.5 - xe
ABySS 1.2.5 - xe

View another version installed on this host

What is ABySS ABySS is a de novo sequence assembler that is designed for very short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.
How to Use ABySS on xe To ensure that the executables ABYSS and ABYSS-P are on your path do
module load abyss/1.2.5

To run ABYSS-P use ''mpirun ABYSS-P ...''

Software Userguide There are man pages for ABYSS, abyss-pe and abyss-tofastq.

Further information can be obtained from the ABySS web site.
 Metadata for using ABySS on xe
 XML Query for ABySS on xe
Partner contact email: help@nf.nci.org.auEmail problems, suggestions, questions to help@nf.nci.org.au