FSL - NCI National Facility
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   FSL -> FSL 4.1.2 - xe
FSL 4.1.2 - xe

What is FSL FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK.

Referencing To quote the relevant references for FSL tools you should look in the individual tool's manual page (or the Analysis Group publications page), and also the FSL overview paper: S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-219, 2004

How to Use FSL on xe To use FSL on the XE do
module load fsl 
This will set the environment variable FSLDIR and add various bin directories to your path.
You will still need to do
source $FSLDIR/etc/fslconf/fsl.csh
from tcsh or csh and
. $FSLDIR/etc/fslconf/fsl.sh
from bash or sh.
 Metadata for using FSL on xe
 XML Query for FSL on xe
 
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